Cleancif is a filter program for removing comments from the .cif files that wol generates. It is necessary because some programs do not recognize the format wol uses for comments:
9 comments comments comments ;
Cleancif takes redirected input and output; given a file wolstuff.cif, type
cleancif < wolstuff.cif > nocomments.cif
To produce a cif file without comments.
Another tool in this toolkit, Boxify, seems to do this task also.